STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sema6aSema domain-containing protein; Belongs to the semaphorin family. (1023 aa)    
Predicted Functional Partners:
pak1
Non-specific serine/threonine protein kinase.
     
 0.668
nrp1
Neuropilin; Belongs to the neuropilin family.
    
 0.668
PLXNA2
Plexin A2.
    
 0.543
plxna4
Plexin A4.
    
 0.543
LOC101158766
Plexin A2.
    
 0.543
LOC101175150
Sema domain-containing protein.
    
 0.543
plxna3
Plexin A3.
    
 0.543
LOC101175236
Plexin A1a.
    
 0.543
LOC101175393
Macrophage stimulating 1 receptor a.
   
 0.504
met
MET proto-oncogene, receptor tyrosine kinase.
   
 0.504
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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