STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101175097Dachsous cadherin-related 1a. (3158 aa)    
Predicted Functional Partners:
cog6
Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.
      
 0.880
LOC101157155
Cytochrome P450, family 21, subfamily A, polypeptide 2; Belongs to the cytochrome P450 family.
      
 0.824
fkbpl
TPR_REGION domain-containing protein.
    
 
 0.757
postn-2
Uncharacterized protein.
   
  
 0.719
LHFPL6
LHFPL tetraspan subfamily member 6.
   
 0.699
ctnnb1
Catenin (cadherin-associated protein), beta 1.
    
 0.656
LOC101175336
ADP-ribosylation factor interacting protein 2a.
      
 0.651
LOC101169131
Tripartite motif containing 3b.
      
 0.651
LOC101169381
ADP-ribosylation factor interacting protein 2b.
      
 0.651
LOC101175583
Tripartite motif containing 3a.
      
 0.651
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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