STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101163554ATP-binding cassette, sub-family B (MDR/TAP), member 11b. (1363 aa)    
Predicted Functional Partners:
abcb11
ATP-binding cassette, sub-family B (MDR/TAP), member 11a.
  
  
0.902
nr1h4
Nuclear receptor subfamily 1, group H, member 4.
   
 0.628
LOC101160349
Cholesterol 7-alpha-monooxygenase; Belongs to the cytochrome P450 family.
   
 
 0.585
katnal2
Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.
  
 0.572
nxph2
Neurexophilin; May be signaling molecules that resemble neuropeptides.
      
 0.568
vps33b
VPS33B late endosome and lysosome associated; Belongs to the STXBP/unc-18/SEC1 family.
   
 
 0.524
vps53
VPS53 subunit of GARP complex.
      
 0.518
LOC101161040
Fructose-1,6-bisphosphatase 1a; Belongs to the FBPase class 1 family.
  
  
 0.517
LOC101156992
Fructose-bisphosphatase 1; Belongs to the FBPase class 1 family.
  
  
 0.517
spata5l1
Spermatogenesis associated 5-like 1.
   
 0.499
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
Server load: low (26%) [HD]