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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cyp26b1Cytochrome P450 26B1; Belongs to the cytochrome P450 family. (512 aa)    
Predicted Functional Partners:
aldh1a2
Retinaldehyde dehydrogenase type2; Belongs to the aldehyde dehydrogenase family.
   
 
 0.967
cyp1a
Cytochrome P450 1A1; Cytochromes P450 are a group of heme-thiolate monooxygenases. They oxidize a variety of structurally unrelated compounds, including steroids, fatty acids, and xenobiotics.
  
0.941
cyp3a
Uncharacterized protein.
  
0.935
aox1
Aldehyde oxidase beta.
   
 
 0.920
LOC101163759
Cytochrome P450, family 26, subfamily C, polypeptide 1; Belongs to the cytochrome P450 family.
  
0.913
cyp26a1
Cytochrome P450 26A1; Belongs to the cytochrome P450 family.
  
  
0.908
LOC101173499
Cytochrome P450, family 7, subfamily B, polypeptide 1; Belongs to the cytochrome P450 family.
  
  
 0.759
sqle
Squalene epoxidase a.
  
 0.729
LOC101172907
Zgc:172315; Belongs to the UDP-glycosyltransferase family.
   
 0.702
LOC101159946
UDP-glucuronosyltransferase; Belongs to the UDP-glycosyltransferase family.
   
 0.702
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.