Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
miga1Mitoguardin 1. (563 aa)    
Predicted Functional Partners:
miga2
Mitoguardin 2.
    
  0.969
piga
Phosphatidylinositol glycan anchor biosynthesis, class A.
      
 0.908
HDGFL3
HDGF like 3.
      
 0.852
wdr20
WD repeat domain 20a.
      
 0.740
mfsd6
Major facilitator superfamily domain containing 6a.
      
 0.722
csgalnact2
Hexosyltransferase.
      
 0.693
zzz3
Zinc finger, ZZ-type containing 3.
      
 0.690
Ak9
Uncharacterized protein.
   
  
 0.665
immt
MICOS complex subunit MIC60; Component of the MICOS complex, a large protein complex of the mitochondrial inner membrane that plays crucial roles in the maintenance of crista junctions, inner membrane architecture, and formation of contact sites to the outer membrane.
      
 0.657
nexn
Ig-like domain-containing protein.
 
    
 0.650
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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