Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rad9aCell cycle checkpoint control protein; Belongs to the rad9 family. (388 aa)    
Predicted Functional Partners:
rad1
RAD1 homolog (S. pombe).
    
 0.997
hus1
Checkpoint protein; Belongs to the HUS1 family.
    
 0.995
rad52
RAD52 homolog, DNA repair protein.
    
 0.963
topbp1
DNA topoisomerase II binding protein 1.
    
 0.951
rad17
RAD17 checkpoint clamp loader component.
   
 0.947
exo1
Exonuclease 1.
   
 0.931
rfc2
Replication factor C (activator 1) 2.
   
 0.931
rfc4
Replication factor C (activator 1) 4.
   
 0.929
atr
ATR serine/threonine kinase; Belongs to the PI3/PI4-kinase family.
    
 0.916
rad9b
RAD9 checkpoint clamp component B.
  
  
 
0.907
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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