Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-expression
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[Homology]
Score
zrsr2Zinc finger (CCCH type), RNA-binding motif and serine/arginine rich 2. (590 aa)    
Predicted Functional Partners:
u2af2
U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.
   
 0.996
snrnp48
Small nuclear ribonucleoprotein 48 (U11/U12).
    
 0.992
rnpc3
RNA-binding region (RNP1, RRM) containing 3.
   
 0.991
sf3b1
Splicing factor 3b, subunit 1.
   
 0.975
pdcd7
Programmed cell death 7.
    
  0.971
LOC101155211
Serine and arginine rich splicing factor 7a.
   
 0.968
zmat5
Zinc finger, matrin-type 5.
   
 0.965
sf3a1
Splicing factor 3a, subunit 1.
   
 
 0.950
sf3a3
Splicing factor 3a, subunit 3.
   
 
 0.941
rbm17
RNA binding motif protein 17.
   
 
 0.939
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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