STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101159391Cell death inducing DFFA like effector a. (214 aa)    
Predicted Functional Partners:
LOC101156812
Cell death inducing DFFA like effector c.
   
 
0.736
dffb
DNA fragmentation factor, beta polypeptide (caspase-activated DNase).
    
 0.700
LOC101157431
Uncharacterized protein.
   
  
 0.571
prdm16
Si:ch211-263k4.2.
     
 0.561
ppargc1a
Peroxisome proliferator-activated receptor gamma, coactivator 1 alpha.
      
 0.558
dio2
Iodothyronine deiodinase; Responsible for the deiodination of T4 (3,5,3',5'- tetraiodothyronine).
      
 0.483
LOC101160745
Lipase, hormone-sensitive a.
   
  
 0.447
lipe
Lipase, hormone-sensitive b.
   
  
 0.447
LOC101160874
Cytochrome c oxidase subunit 7A2 like.
   
  
 0.422
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.