Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101158081Uncharacterized protein. (380 aa)    
Predicted Functional Partners:
tefm
UTP6 small subunit processome component.
      
 0.650
crlf3
Cytokine receptor-like factor 3.
      
 0.603
rps6kc1
Ribosomal protein S6 kinase polypeptide 1.
      
 0.464
rps6kl1
Ribosomal protein S6 kinase-like 1.
      
 0.462
arfgap1
ADP-ribosylation factor GTPase activating protein 1.
    
 
 0.449
sh3yl1
SH3 and SYLF domain containing 1.
    
 
 0.442
gak
Cyclin G associated kinase.
   
 
 0.436
synj1
Synaptojanin 1.
    
 
 0.400
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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