STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101162917Fras1 related extracellular matrix 1b. (1904 aa)    
Predicted Functional Partners:
LOC101175584
FRAS1 related extracellular matrix 2b.
  
0.940
frem2
FRAS1 related extracellular matrix 2a.
  
0.926
itga8
Integrin, alpha 8; Belongs to the integrin alpha chain family.
   
 
 0.906
LOC101154978
Integrin beta; Belongs to the integrin beta chain family.
    
  0.901
itgb1
Integrin beta; Belongs to the integrin beta chain family.
    
  0.901
npnt
Nephronectin a.
    
 0.834
LOC101173870
Kazal-type serine peptidase inhibitor domain 3.
      
 0.679
LOC101168113
Ankyrin repeat and sterile alpha motif domain containing 1Ab.
   
  0.588
LOC101161704
Si:dkeyp-9d4.3.
   
  0.588
anks1b
Ankyrin repeat and sterile alpha motif domain containing 1B.
   
  0.588
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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