Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC100049510Si:dkey-208k4.2. (368 aa)    
Predicted Functional Partners:
LOC101173800
Myb_DNA-bind_7 domain-containing protein.
    
 0.700
Gtf3c1
Uncharacterized protein.
    
 0.676
ENSORLP00000033933
B-block_TFIIIC domain-containing protein.
    
 0.676
gtf3c3
General transcription factor IIIC, polypeptide 3.
    
 0.651
POC1A
WD_REPEATS_REGION domain-containing protein.
    
 0.632
gtf3c5
General transcription factor IIIC, polypeptide 5.
    
 0.608
polr2l
Polymerase (RNA) II (DNA directed) polypeptide L.
    
 0.583
polr2f
Polymerase (RNA) II (DNA directed) polypeptide F.
   
 0.565
gtf3c4
General transcription factor IIIC, polypeptide 4.
    
 0.562
polr3c
RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 0.559
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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