STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ccn4Cellular communication network factor 4a. (361 aa)    
Predicted Functional Partners:
LOC101156103
PVR cell adhesion molecule related 2 like.
      
 0.585
cilp2
Cartilage intermediate layer protein 2.
   
  
 0.504
LOC101169556
ADAM metallopeptidase domain 12.
      
 0.501
ADAM12
ADAM metallopeptidase domain 12.
      
 0.501
tesc
Tescalcin a.
      
 0.433
amh
Anti-muellerian hormone.
   
  
 0.432
smpdl3a
Acid sphingomyelinase-like phosphodiesterase.
      
 0.426
shh
Hedgehog protein; Intercellular signal essential for a variety of patterning events during development.
      
 0.400
LOC101170815
Tenascin C.
      
 0.400
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.