Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cplane2Ciliogenesis and planar polarity effector 2. (244 aa)    
Predicted Functional Partners:
wdpcp
WD repeat containing planar cell polarity effector.
    
 
 0.975
ift22
Intraflagellar transport 22 homolog (Chlamydomonas).
      
 0.902
ift27
Intraflagellar transport 27.
     
 0.897
rab23
RAB23, member RAS oncogene family.
    
 0.895
arl13b
ADP-ribosylation factor-like 13b.
    
 0.892
intu
Inturned planar cell polarity protein.
    
 0.871
LOC101171604
Zgc:66426.
    
 0.744
IFT43
Uncharacterized protein.
      
 0.716
LOC101160749
Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.
      
 0.692
arl3
ADP ribosylation factor like GTPase 3; Belongs to the small GTPase superfamily. Arf family.
      
 0.692
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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