STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101175584FRAS1 related extracellular matrix 2b. (3114 aa)    
Predicted Functional Partners:
LOC101162917
Fras1 related extracellular matrix 1b.
  
0.940
LOC101154978
Integrin beta; Belongs to the integrin beta chain family.
    
 0.910
itgb1
Integrin beta; Belongs to the integrin beta chain family.
    
 0.910
itga8
Integrin, alpha 8; Belongs to the integrin alpha chain family.
     
 0.908
ENSORLP00000038034
Uncharacterized protein.
 
 
  0.904
frem2
FRAS1 related extracellular matrix 2a.
  
  
 
0.901
npnt
Nephronectin a.
    
  0.815
fau
40S ribosomal protein S30.
   
  0.758
LOC101160447
RAN binding protein 2.
   
 
  0.510
gle1
Uncharacterized protein.
    
 0.475
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.