Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101175584FRAS1 related extracellular matrix 2b. (3114 aa)    
Predicted Functional Partners:
ENSORLP00000038034
Uncharacterized protein.
 
  
  0.980
itga8
Integrin, alpha 8; Belongs to the integrin alpha chain family.
    
 0.909
itgb1
Integrin beta; Belongs to the integrin beta chain family.
    
  0.906
npnt
Nephronectin a.
    
  0.812
fau
40S ribosomal protein S30.
   
  0.640
grip1
Glutamate receptor interacting protein 1.
     
 0.511
LOC101160447
RAN binding protein 2.
   
  0.504
dnajc12
DnaJ (Hsp40) homolog, subfamily C, member 12.
      
 0.491
proser1
Proline and serine rich 1.
    
 0.485
NHLRC3
NHL repeat containing 3.
    
 0.484
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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