STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nfiaNuclear factor 1; Recognizes and binds the palindromic sequence 5'- TTGGCNNNNNGCCAA-3' present in viral and cellular promoters and in the origin of replication of adenovirus type 2. These proteins are individually capable of activating transcription and replication. (552 aa)    
Predicted Functional Partners:
LOC101158988
E2F transcription factor 7.
      
 0.559
LOC101173626
Copine VIII.
      
 0.517
CPNE8
Copine 8.
      
 0.517
myo10
Myosin X; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.
      
 0.503
LOC100301625
Forkhead box Q2.
    
 
 0.460
ENSORLP00000033948
Homeobox A5a.
    
 
 0.449
elavl3
ELAV-like protein; Belongs to the RRM elav family.
      
 0.439
SATB2
DNA-binding protein SATB.
      
 0.433
gata2
Transcription factor GATA-2.
    
 
 0.406
plagl2
Pleiomorphic adenoma gene-like 2.
    
 
 0.402
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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