STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fubp1Far upstream element (FUSE) binding protein 1. (611 aa)    
Predicted Functional Partners:
PUF60
Poly-U binding splicing factor b.
   
 
 0.724
LOC101171279
Uncharacterized protein.
   
 
 0.724
ENSORLP00000029956
Uncharacterized protein.
   
 0.668
ubp1
Upstream binding protein 1.
   
  
 0.604
rbm15
RNA binding motif protein 15.
    
 
 0.581
usp7
Ubiquitin specific peptidase 7 (herpes virus-associated); Belongs to the peptidase C19 family.
      
 0.580
exosc2
Exosome component 2.
   
  0.564
exosc5
Exosome component 5.
   
 
 0.528
dis3
DIS3 exosome endoribonuclease and 3'-5' exoribonuclease; Belongs to the RNR ribonuclease family.
     
 0.502
exosc4
Exosome component 4.
   
 
 0.502
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.