Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
fubp1Far upstream element (FUSE) binding protein 1. (611 aa)    
Predicted Functional Partners:
PUF60
Poly-U binding splicing factor b.
   
 
 0.837
LOC101171279
Uncharacterized protein.
   
 
 0.837
hnrnpm
Heterogeneous nuclear ribonucleoprotein M.
   
 
 0.759
LOC101173152
Uncharacterized protein.
   
   0.735
LOC101174037
Far upstream element (FUSE) binding protein 3.
   
   0.735
exosc2
Exosome component 2.
   
  0.722
aimp2
Aminoacyl tRNA synthetase complex interacting multifunctional protein 2.
    
 
 0.683
tk1
Thymidine kinase.
      
 0.655
ubp1
Upstream binding protein 1.
   
  
 0.654
huwe1
HECT, UBA and WWE domain containing E3 ubiquitin protein ligase 1.
   
 
 0.639
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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