Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101155137Uncharacterized protein. (193 aa)    
Predicted Functional Partners:
tmem177
Transmembrane protein 177.
     
 0.720
LOC101162329
Cytochrome c oxidase assembly factor COX16.
     
 0.720
mettl14
Methyltransferase like 14; Belongs to the MT-A70-like family.
   
 
 0.690
znhit1
Zinc finger, HIT-type containing 1.
     
 0.636
mettl3
Methyltransferase like 3; Belongs to the MT-A70-like family.
   
 
 0.626
psmc3
Proteasome 26S subunit ATPase 3; Belongs to the AAA ATPase family.
   
   0.601
psmc4
Proteasome 26S subunit, ATPase 4; Belongs to the AAA ATPase family.
   
   0.601
psmd12
Proteasome 26S subunit, non-ATPase 12.
   
   0.600
psmc5
Proteasome 26S subunit, ATPase 5; Belongs to the AAA ATPase family.
   
   0.598
psma1
Proteasome endopeptidase complex.
    
   0.596
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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