STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC111949086BTB domain-containing protein. (644 aa)    
Predicted Functional Partners:
bbs2
Bardet-Biedl syndrome 2 protein homolog.
    
 0.912
bbs7
Bardet-Biedl syndrome 7.
   
 0.908
bbs1
Bardet-Biedl syndrome 1.
    
 0.908
bbs4
Bardet-Biedl syndrome 4.
    
 0.904
bbs9
Bardet-Biedl syndrome 9.
   
 0.904
ttc8
Tetratricopeptide repeat domain 8.
    
 0.895
lztfl1
Leucine zipper transcription factor-like 1.
   
 0.859
ENSORLP00000044528
BBSome interacting protein 1.
    
 0.662
smo
Smoothened, frizzled class receptor; Belongs to the G-protein coupled receptor Fz/Smo family.
     
 0.569
H2MG95_ORYLA
Ring-box 1, E3 ubiquitin protein ligase.
    
 0.566
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.