STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tefmUTP6 small subunit processome component. (929 aa)    
Predicted Functional Partners:
LOC101167684
PWP2 small subunit processome component.
   
 0.999
utp15
UTP15 small subunit processome component.
   
 0.999
utp3
UTP3 small subunit processome component.
   
 0.999
nol6
Nucleolar protein 6.
   
 0.999
wdr46
WD repeat domain 46.
   
 0.999
utp4
UTP4 small subunit processome component.
   
 0.999
wdr75
WD repeat domain 75.
   
 0.999
utp18
WD_REPEATS_REGION domain-containing protein.
   
 0.999
wdr36
WD repeat domain 36.
   
 0.999
bms1
BMS1 ribosome biogenesis factor.
   
 0.999
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.