p3h4 protein (Oryzias latipes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

p3h4

Prolyl 3-hydroxylase family member 4 (non-enzymatic). (421 aa)

Predicted Functional Partners:

ppib

0.930

ppic

0.808

p3h3

0.795

p3h2

0.790

p3h1

0.785

serpinh1

0.671

wdr19

0.608

TMEM38B

0.500

col6a1

0.492

ENSORLP00000029394

0.490

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSORLP00000029394	col6a1	ENSORLP00000029394	ENSORLP00000014595	Uncharacterized protein.	Collagen, type VI, alpha 1.	0.478
ENSORLP00000029394	p3h1	ENSORLP00000029394	ENSORLP00000015732	Uncharacterized protein.	Prolyl 3-hydroxylase 1.	0.417
ENSORLP00000029394	p3h2	ENSORLP00000029394	ENSORLP00000007094	Uncharacterized protein.	Prolyl 3-hydroxylase 2.	0.417
ENSORLP00000029394	p3h3	ENSORLP00000029394	ENSORLP00000015914	Uncharacterized protein.	Prolyl 3-hydroxylase 3.	0.417
ENSORLP00000029394	p3h4	ENSORLP00000029394	ENSORLP00000004427	Uncharacterized protein.	Prolyl 3-hydroxylase family member 4 (non-enzymatic).	0.490
ENSORLP00000029394	ppib	ENSORLP00000029394	ENSORLP00000002123	Uncharacterized protein.	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.	0.522
ENSORLP00000029394	serpinh1	ENSORLP00000029394	ENSORLP00000017946	Uncharacterized protein.	Serpin peptidase inhibitor, clade H (heat shock protein 47), member 1b; Belongs to the serpin family.	0.526
TMEM38B	p3h1	ENSORLP00000029639	ENSORLP00000015732	Transmembrane protein 38B.	Prolyl 3-hydroxylase 1.	0.741
TMEM38B	p3h2	ENSORLP00000029639	ENSORLP00000007094	Transmembrane protein 38B.	Prolyl 3-hydroxylase 2.	0.431
TMEM38B	p3h3	ENSORLP00000029639	ENSORLP00000015914	Transmembrane protein 38B.	Prolyl 3-hydroxylase 3.	0.431
TMEM38B	p3h4	ENSORLP00000029639	ENSORLP00000004427	Transmembrane protein 38B.	Prolyl 3-hydroxylase family member 4 (non-enzymatic).	0.500
TMEM38B	ppib	ENSORLP00000029639	ENSORLP00000002123	Transmembrane protein 38B.	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.	0.706
TMEM38B	serpinh1	ENSORLP00000029639	ENSORLP00000017946	Transmembrane protein 38B.	Serpin peptidase inhibitor, clade H (heat shock protein 47), member 1b; Belongs to the serpin family.	0.604
col6a1	ENSORLP00000029394	ENSORLP00000014595	ENSORLP00000029394	Collagen, type VI, alpha 1.	Uncharacterized protein.	0.478
col6a1	p3h1	ENSORLP00000014595	ENSORLP00000015732	Collagen, type VI, alpha 1.	Prolyl 3-hydroxylase 1.	0.432
col6a1	p3h2	ENSORLP00000014595	ENSORLP00000007094	Collagen, type VI, alpha 1.	Prolyl 3-hydroxylase 2.	0.432
col6a1	p3h3	ENSORLP00000014595	ENSORLP00000015914	Collagen, type VI, alpha 1.	Prolyl 3-hydroxylase 3.	0.432
col6a1	p3h4	ENSORLP00000014595	ENSORLP00000004427	Collagen, type VI, alpha 1.	Prolyl 3-hydroxylase family member 4 (non-enzymatic).	0.492
col6a1	ppib	ENSORLP00000014595	ENSORLP00000002123	Collagen, type VI, alpha 1.	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.	0.594
col6a1	ppic	ENSORLP00000014595	ENSORLP00000021394	Collagen, type VI, alpha 1.	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.	0.503