Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rab11fip4RAB11 family interacting protein 4 (class II) b. (513 aa)    
Predicted Functional Partners:
LOC101171748
RAB11 family interacting protein 4 (class II) a.
  
  
 
0.902
rab11fip3
RAB11 family interacting protein 3 (class II).
     
 
0.900
LOC101171030
RAB11a, member RAS oncogene family, like.
    
 0.796
H2MN86_ORYLA
ADP-ribosylation factor 6b.
    
 0.765
LOC101159906
RAB11B, member RAS oncogene family, b.
    
 0.755
RAB11A
RAB11A, member RAS oncogene family.
    
 0.755
LOC101160399
RAB11B, member RAS oncogene family, a.
    
 0.755
LOC101156358
Uncharacterized protein.
    
 0.755
gsc
Goosecoid.
    
   0.717
rab3il1
RAB3A interacting protein (rabin3)-like 1.
    
 0.690
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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