rab11fip4 protein (Oryzias latipes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

rab11fip4

RAB11 family interacting protein 4 (class II) b. (513 aa)

Predicted Functional Partners:

gsc

0.821

LOC101159906

0.775

RAB11A

0.775

LOC101160399

0.775

LOC101156358

0.775

LOC101171030

0.775

LOC101159434

0.710

LOC101158957

0.710

rab25

0.710

rab3il1

0.699

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC101156358	rab11fip4	ENSORLP00000035081	ENSORLP00000004431	Uncharacterized protein.	RAB11 family interacting protein 4 (class II) b.	0.775
LOC101156358	rab3il1	ENSORLP00000035081	ENSORLP00000007704	Uncharacterized protein.	RAB3A interacting protein (rabin3)-like 1.	0.817
LOC101158957	rab11fip4	ENSORLP00000015208	ENSORLP00000004431	RAB25, member RAS oncogene family a.	RAB11 family interacting protein 4 (class II) b.	0.710
LOC101158957	rab3il1	ENSORLP00000015208	ENSORLP00000007704	RAB25, member RAS oncogene family a.	RAB3A interacting protein (rabin3)-like 1.	0.737
LOC101159434	rab11fip4	ENSORLP00000012388	ENSORLP00000004431	RAB, member of RAS oncogene family-like 2.	RAB11 family interacting protein 4 (class II) b.	0.710
LOC101159434	rab3il1	ENSORLP00000012388	ENSORLP00000007704	RAB, member of RAS oncogene family-like 2.	RAB3A interacting protein (rabin3)-like 1.	0.737
LOC101159906	LOC101160399	ENSORLP00000019145	ENSORLP00000019170	RAB11B, member RAS oncogene family, b.	RAB11B, member RAS oncogene family, a.	0.900
LOC101159906	LOC101171030	ENSORLP00000019145	ENSORLP00000042567	RAB11B, member RAS oncogene family, b.	RAB11a, member RAS oncogene family, like.	0.901
LOC101159906	rab11fip4	ENSORLP00000019145	ENSORLP00000004431	RAB11B, member RAS oncogene family, b.	RAB11 family interacting protein 4 (class II) b.	0.775
LOC101159906	rab3il1	ENSORLP00000019145	ENSORLP00000007704	RAB11B, member RAS oncogene family, b.	RAB3A interacting protein (rabin3)-like 1.	0.817
LOC101160399	LOC101159906	ENSORLP00000019170	ENSORLP00000019145	RAB11B, member RAS oncogene family, a.	RAB11B, member RAS oncogene family, b.	0.900
LOC101160399	LOC101171030	ENSORLP00000019170	ENSORLP00000042567	RAB11B, member RAS oncogene family, a.	RAB11a, member RAS oncogene family, like.	0.901
LOC101160399	rab11fip4	ENSORLP00000019170	ENSORLP00000004431	RAB11B, member RAS oncogene family, a.	RAB11 family interacting protein 4 (class II) b.	0.775
LOC101160399	rab3il1	ENSORLP00000019170	ENSORLP00000007704	RAB11B, member RAS oncogene family, a.	RAB3A interacting protein (rabin3)-like 1.	0.817
LOC101171030	LOC101159906	ENSORLP00000042567	ENSORLP00000019145	RAB11a, member RAS oncogene family, like.	RAB11B, member RAS oncogene family, b.	0.901
LOC101171030	LOC101160399	ENSORLP00000042567	ENSORLP00000019170	RAB11a, member RAS oncogene family, like.	RAB11B, member RAS oncogene family, a.	0.901
LOC101171030	rab11fip4	ENSORLP00000042567	ENSORLP00000004431	RAB11a, member RAS oncogene family, like.	RAB11 family interacting protein 4 (class II) b.	0.775
LOC101171030	rab3il1	ENSORLP00000042567	ENSORLP00000007704	RAB11a, member RAS oncogene family, like.	RAB3A interacting protein (rabin3)-like 1.	0.817
RAB11A	rab11fip4	ENSORLP00000019148	ENSORLP00000004431	RAB11A, member RAS oncogene family.	RAB11 family interacting protein 4 (class II) b.	0.775
RAB11A	rab3il1	ENSORLP00000019148	ENSORLP00000007704	RAB11A, member RAS oncogene family.	RAB3A interacting protein (rabin3)-like 1.	0.817