STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC105354092Retinol binding protein 7b, cellular. (135 aa)    
Predicted Functional Partners:
ube4b
Ubiquitination factor E4B, UFD2 homolog (S. cerevisiae).
 
    
 0.612
rbp4
Retinol binding protein 4, plasma; Belongs to the calycin superfamily. Lipocalin family.
   
 
 0.560
nhlrc2
NHL repeat containing 2.
      
 0.535
atoh8
BHLH domain-containing protein.
   
  
 0.502
h6pd
Hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase).
      
 0.477
rbp3
Retinol binding protein 3.
      
 0.445
nmnat2
Nicotinamide nucleotide adenylyltransferase 2.
      
 0.427
LOC101161977
Rho related BTB domain containing 4.
      
 0.400
rhobtb2
Rho related BTB domain containing 2a.
      
 0.400
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.