Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
fgf11Fibroblast growth factor; Belongs to the heparin-binding growth factors family. (249 aa)    
Predicted Functional Partners:
fgf23
Fibroblast growth factor 23; Belongs to the heparin-binding growth factors family.
   
 
 0.743
LOC101169622
Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family.
    
 0.697
fgf18
Fibroblast growth factor 18a; Belongs to the heparin-binding growth factors family.
   
 
 0.652
fgfr2
Fibroblast growth factor receptor.
    
 0.639
LOC100049521
Fibroblast growth factor receptor 4.
    
 0.639
fgfr1
Fibroblast growth factor receptor.
    
 0.639
fgfr3
Fibroblast growth factor receptor.
    
 0.639
egf
Epidermal growth factor.
    
 0.628
fgf19
Fibroblast growth factor; Belongs to the heparin-binding growth factors family.
   
 
 0.626
LOC101155126
Fibroblast growth factor receptor.
    
 0.609
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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