STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101169984Receptor protein-tyrosine kinase. (1191 aa)    
Predicted Functional Partners:
egf
Epidermal growth factor.
   
 0.992
grb2
Growth factor receptor-bound protein 2b.
    
 0.988
cbl
Cbl proto-oncogene, E3 ubiquitin protein ligase.
    
 0.977
LOC101166137
EGF-like domain-containing protein.
    
 0.972
LOC101163758
Uncharacterized protein.
    
 0.971
cblb
Cbl proto-oncogene B, E3 ubiquitin protein ligase.
    
 0.971
LOC101156096
Heparin-binding EGF-like growth factor a.
    
 0.970
SRC
Tyrosine-protein kinase.
  
 
0.969
LOC101166855
Transforming growth factor, alpha.
    
 0.969
SHC3
SHC adaptor protein 3.
    
 0.968
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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