Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LOC101155530Procollagen, type V, alpha 1. (1501 aa)    
Predicted Functional Partners:
ENSORLP00000039810
Uncharacterized protein.
 
      0.899
ENSORLP00000040115
Uncharacterized protein.
 
      0.899
ENSORLP00000044274
LAM_G_DOMAIN domain-containing protein.
 
      0.898
sparc
Osteonectin.
   
 0.500
col6a1
Collagen, type VI, alpha 1.
  
0.499
H2MFT6_ORYLA
Uncharacterized protein.
    
   0.488
ppic
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
     
 0.470
serpinh1
Serpin peptidase inhibitor, clade H (heat shock protein 47), member 1b; Belongs to the serpin family.
   
 0.462
FBN1
Fibrillin 1.
   
 0.458
thbs2
Thrombospondin 2a.
    
 0.439
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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