STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101155530Procollagen, type V, alpha 1. (1501 aa)    
Predicted Functional Partners:
ENSORLP00000039810
Uncharacterized protein.
 
      0.899
ENSORLP00000040115
Uncharacterized protein.
 
      0.899
ENSORLP00000044274
LAM_G_DOMAIN domain-containing protein.
 
      0.898
Col5a2
Collagen, type V, alpha 2a.
  
 
0.637
LOC101172057
Collagen, type V, alpha 2b.
  
 
 
0.625
col1a2
Collagen, type I, alpha 2.
  
 
0.606
col11a1
Collagen, type XI, alpha 1a.
  
  
 
0.546
ppic
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
     
 0.529
FBN1
Fibrillin 1.
   
 0.492
cwc27
CWC27 spliceosome associated cyclophilin.
     
 0.470
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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