STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101167445TAR DNA binding protein. (402 aa)    
Predicted Functional Partners:
H2M705_ORYLA
TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
   
 0.927
tardbp
TAR DNA binding protein, like.
  
  
 
0.901
ewsr1
EWS RNA-binding protein 1b.
   
 0.879
prkn
E3 ubiquitin-protein ligase parkin; Functions within a multiprotein E3 ubiquitin ligase complex, catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins; Belongs to the RBR family. Parkin subfamily.
    
 
 0.876
ccnf
Cyclin F; Belongs to the cyclin family.
    
 
 0.854
hspa4
Heat shock protein 4b.
   
 0.809
LOC101166977
Heat shock protein 4a.
   
 0.809
c9orf72
Zgc:100846.
      
 0.807
ubqln4
Ubiquilin 4.
   
 0.797
sqstm1
Sequestosome 1.
    
 
 0.785
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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