STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VAPBVAMP associated protein B and C. (244 aa)    
Predicted Functional Partners:
stard3
StAR-related lipid transfer (START) domain containing 3.
    
 
 0.822
stard3nl
STARD3 N-terminal like.
    
 
 0.690
bcap29
Uncharacterized protein.
   
 0.624
bcap31
B cell receptor associated protein 31.
   
 0.624
stx5
Syntaxin 5A; Belongs to the syntaxin family.
    
 0.600
LOC101167034
B cell receptor associated protein 29.
   
 0.591
sec61b
Protein transport protein Sec61 subunit beta; Necessary for protein translocation in the endoplasmic reticulum.
   
 0.583
LOC101161217
Oxysterol-binding protein; Belongs to the OSBP family.
    
 0.568
LOC101170773
Oxysterol-binding protein; Belongs to the OSBP family.
    
 0.568
LOC101160562
Oxysterol-binding protein; Belongs to the OSBP family.
    
 0.568
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.