Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
DNM1LDynamin 1-like; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (721 aa)    
Predicted Functional Partners:
pgam5
PGAM family member 5, serine/threonine protein phosphatase, mitochondrial.
    
 0.937
gak
Cyclin G associated kinase.
   
 0.924
LOC101168078
Receptor-interacting serine-threonine kinase 3; Belongs to the protein kinase superfamily.
   
 0.912
LOC101168038
Protein kinase domain-containing protein.
   
 0.912
LOC101168285
Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.
   
 0.912
ripk1
Receptor (TNFRSF)-interacting serine-threonine kinase 1, like.
   
 0.911
LOC101168093
Protein kinase domain-containing protein.
   
 0.907
H2M1A0_ORYLA
Protein kinase domain-containing protein.
   
 0.907
LOC101169210
Si:dkey-32e23.4; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.
  
  
 
0.901
LOC101168415
Uncharacterized protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.
  
  
 
0.901
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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