STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101168450Macrophage stimulating 1; Belongs to the peptidase S1 family. Plasminogen subfamily. (708 aa)    
Predicted Functional Partners:
LOC101175393
Macrophage stimulating 1 receptor a.
    
 0.799
met
MET proto-oncogene, receptor tyrosine kinase.
    
 0.799
mst1r
Macrophage stimulating 1 receptor b.
    
 0.799
LOC101155198
Si:dkey-16l2.16.
      
 0.653
rab35
RAB35, member RAS oncogene family b.
      
 0.653
hpn
Hepsin; Belongs to the peptidase S1 family.
  
 
 
0.638
HGFAC
HGF activator.
   
0.637
ambra1
Autophagy/beclin-1 regulator 1b.
    
 0.613
ubash3b
Ubiquitin associated and SH3 domain containing Ba.
   
  
 0.592
slc25a48
Solute carrier family 25 member 48; Belongs to the mitochondrial carrier (TC 2.A.29) family.
      
 0.590
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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