STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
zfyve9Zinc finger, FYVE domain containing 9a. (1096 aa)    
Predicted Functional Partners:
LOC101169523
Mothers against decapentaplegic homolog.
   
 0.971
smad2
Mothers against decapentaplegic homolog.
   
 0.971
LOC101159109
Mothers against decapentaplegic homolog.
   
 0.971
H2L587_ORYLA
DUF3480 domain-containing protein.
  
  
 
0.901
LOC101173779
Zinc finger, FYVE domain containing 9b.
  
  
 
0.901
smad3
Mothers against decapentaplegic homolog.
   
 0.722
ACVR1B
Receptor protein serine/threonine kinase; Belongs to the protein kinase superfamily.
   
 0.676
ACVR1C
Receptor protein serine/threonine kinase; Belongs to the protein kinase superfamily.
   
 0.676
LOC101163346
Bone morphogenetic protein 16.
     
 0.675
TGFBR2
Serine/threonine-protein kinase receptor; Belongs to the protein kinase superfamily. TKL Ser/Thr protein kinase family. TGFB receptor subfamily.
    
 0.653
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.