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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ttll11Tubulin tyrosine ligase-like family, member 11. (718 aa)    
Predicted Functional Partners:
fbxw2
F-box and WD repeat domain containing 2.
      
 0.800
psmd5
Proteasome 26S subunit, non-ATPase 5.
      
 0.770
LOC101167092
Uncharacterized protein.
      
 0.677
LOC101162540
RAB14, member RAS oncogene family.
      
 0.676
poc5
POC5 centriolar protein homolog (Chlamydomonas).
      
 0.675
LOC101175325
Uncharacterized protein.
      
 0.656
LOC101173393
Si:ch211-236k19.2.
      
 0.632
LOC101161174
Prostaglandin-endoperoxide synthase 1.
   
  
 0.606
LOC101173634
Prostaglandin-endoperoxide synthase 1.
   
  
 0.605
LOC101156944
RAS protein activator like 3.
      
 0.604
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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