Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
blzf1Basic leucine zipper nuclear factor 1. (409 aa)    
Predicted Functional Partners:
acbd3
Acyl-Coenzyme A binding domain containing 3.
    
 
 0.936
rab2a
RAB2A, member RAS oncogene family.
    
 0.904
GORASP2
GRASP55_65 domain-containing protein.
    
 0.896
gorasp1
Golgi reassembly stacking protein 1a.
    
 0.896
LOC101156858
GRASP55_65 domain-containing protein.
    
 0.896
LOC101167738
Golgi reassembly stacking protein 2.
    
 0.896
dnajc27
DnaJ (Hsp40) homolog, subfamily C, member 27.
    
 0.756
sec63
SEC63 homolog, protein translocation regulator.
      
 0.720
rrad
Ras-related associated with diabetes.
    
 0.700
adprh
ADP-ribosylarginine hydrolase.
   
  
 0.677
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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