STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cc2d1bCoiled-coil and C2 domain containing 1B. (821 aa)    
Predicted Functional Partners:
LOC101156446
Charged multivesicular body protein 4C.
    
 0.853
LOC101173541
Uncharacterized protein.
    
 0.853
chmp4b
Charged multivesicular body protein 4Bb.
    
 0.853
chmp7
Charged multivesicular body protein 7.
     
 0.760
tm9sf1
Transmembrane 9 superfamily member; Belongs to the nonaspanin (TM9SF) (TC 9.A.2) family.
    
 0.748
chmp2a
Charged multivesicular body protein 2A.
     
 0.731
chmp3
Charged multivesicular body protein 3.
     
 0.731
ist1
IST1 factor associated with ESCRT-III.
     
 0.730
phgdh
D-3-phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
      
 0.694
LOC101168369
Charged multivesicular body protein 6a.
     
 0.654
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.