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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
chd1lChromodomain helicase DNA binding protein 1-like. (900 aa)    
Predicted Functional Partners:
parp1
Poly [ADP-ribose] polymerase; Poly-ADP-ribosyltransferase that mediates poly-ADP- ribosylation of proteins and plays a key role in DNA repair.
   
 0.914
pole3
CBFD_NFYB_HMF domain-containing protein.
    
 0.892
ENSORLP00000033531
CHDCT2 domain-containing protein.
 
  
 
 0.834
parp2
Poly [ADP-ribose] polymerase.
   
 0.828
ddb2
Damage-specific DNA binding protein 2.
   
 0.791
baz1b
Bromodomain adjacent to zinc finger domain, 1B.
    
 0.790
fancm
Uncharacterized protein.
   
 0.785
BAZ1A
Bromodomain adjacent to zinc finger domain 1A.
    
 0.777
BAZ2B
Bromodomain adjacent to zinc finger domain 2B.
    
 0.777
baz2b
Bromodomain adjacent to zinc finger domain, 2Ba.
    
 0.777
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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