chd1l protein (Oryzias latipes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

chd1l

Chromodomain helicase DNA binding protein 1-like. (900 aa)

Predicted Functional Partners:

parp1

0.991

ENSORLP00000041372

0.968

xrcc1

0.965

RNF146

0.962

parp2

0.960

xrcc6

0.959

xpa

0.954

supt16h

0.936

xpc

0.936

hltf

0.925

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSORLP00000041372	RNF146	ENSORLP00000041372	ENSORLP00000007221	Uncharacterized protein.	Ring finger protein 146.	0.731
ENSORLP00000041372	chd1l	ENSORLP00000041372	ENSORLP00000004584	Uncharacterized protein.	Chromodomain helicase DNA binding protein 1-like.	0.968
ENSORLP00000041372	hltf	ENSORLP00000041372	ENSORLP00000015433	Uncharacterized protein.	Helicase-like transcription factor.	0.946
ENSORLP00000041372	parp1	ENSORLP00000041372	ENSORLP00000017176	Uncharacterized protein.	Poly [ADP-ribose] polymerase; Poly-ADP-ribosyltransferase that mediates poly-ADP- ribosylation of proteins and plays a key role in DNA repair.	0.983
ENSORLP00000041372	parp2	ENSORLP00000041372	ENSORLP00000045298	Uncharacterized protein.	Poly [ADP-ribose] polymerase.	0.976
ENSORLP00000041372	supt16h	ENSORLP00000041372	ENSORLP00000011001	Uncharacterized protein.	SPT16 homolog, facilitates chromatin remodeling subunit.	0.939
ENSORLP00000041372	xpc	ENSORLP00000041372	ENSORLP00000041298	Uncharacterized protein.	Xeroderma pigmentosum, complementation group C.	0.951
ENSORLP00000041372	xrcc1	ENSORLP00000041372	ENSORLP00000039866	Uncharacterized protein.	X-ray repair complementing defective repair in Chinese hamster cells 1.	0.988
ENSORLP00000041372	xrcc6	ENSORLP00000041372	ENSORLP00000003026	Uncharacterized protein.	X-ray repair complementing defective repair in Chinese hamster cells 6.	0.983
RNF146	ENSORLP00000041372	ENSORLP00000007221	ENSORLP00000041372	Ring finger protein 146.	Uncharacterized protein.	0.731
RNF146	chd1l	ENSORLP00000007221	ENSORLP00000004584	Ring finger protein 146.	Chromodomain helicase DNA binding protein 1-like.	0.962
RNF146	hltf	ENSORLP00000007221	ENSORLP00000015433	Ring finger protein 146.	Helicase-like transcription factor.	0.813
RNF146	parp1	ENSORLP00000007221	ENSORLP00000017176	Ring finger protein 146.	Poly [ADP-ribose] polymerase; Poly-ADP-ribosyltransferase that mediates poly-ADP- ribosylation of proteins and plays a key role in DNA repair.	0.976
RNF146	parp2	ENSORLP00000007221	ENSORLP00000045298	Ring finger protein 146.	Poly [ADP-ribose] polymerase.	0.975
RNF146	supt16h	ENSORLP00000007221	ENSORLP00000011001	Ring finger protein 146.	SPT16 homolog, facilitates chromatin remodeling subunit.	0.936
RNF146	xpc	ENSORLP00000007221	ENSORLP00000041298	Ring finger protein 146.	Xeroderma pigmentosum, complementation group C.	0.928
RNF146	xrcc1	ENSORLP00000007221	ENSORLP00000039866	Ring finger protein 146.	X-ray repair complementing defective repair in Chinese hamster cells 1.	0.947
chd1l	ENSORLP00000041372	ENSORLP00000004584	ENSORLP00000041372	Chromodomain helicase DNA binding protein 1-like.	Uncharacterized protein.	0.968
chd1l	RNF146	ENSORLP00000004584	ENSORLP00000007221	Chromodomain helicase DNA binding protein 1-like.	Ring finger protein 146.	0.962
chd1l	hltf	ENSORLP00000004584	ENSORLP00000015433	Chromodomain helicase DNA binding protein 1-like.	Helicase-like transcription factor.	0.925