LOC101161855 protein (Oryzias latipes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC101161855

Ras homolog, mTORC1 binding. (184 aa)

Predicted Functional Partners:

Tsc2

0.982

ENSORLP00000031311

0.977

Mtor

0.976

rptor

0.976

mlst8

0.970

akt1s1

0.956

deptor

0.952

LOC101162204

0.928

bnip3

0.924

LOC101169126

0.923

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSORLP00000031311	LOC101161855	ENSORLP00000031311	ENSORLP00000004585	Uncharacterized protein.	Ras homolog, mTORC1 binding.	0.977
ENSORLP00000031311	LOC101162204	ENSORLP00000031311	ENSORLP00000029164	Uncharacterized protein.	TBC1 domain family, member 7.	0.992
ENSORLP00000031311	Mtor	ENSORLP00000031311	ENSORLP00000000608	Uncharacterized protein.	Serine/threonine-protein kinase TOR.	0.850
ENSORLP00000031311	Tsc2	ENSORLP00000031311	ENSORLP00000032706	Uncharacterized protein.	DUF3384 domain-containing protein.	0.993
ENSORLP00000031311	mlst8	ENSORLP00000031311	ENSORLP00000003877	Uncharacterized protein.	MTOR associated protein, LST8 homolog (S. cerevisiae).	0.735
ENSORLP00000031311	rptor	ENSORLP00000031311	ENSORLP00000031829	Uncharacterized protein.	Regulatory associated protein of MTOR, complex 1.	0.788
LOC101161855	ENSORLP00000031311	ENSORLP00000004585	ENSORLP00000031311	Ras homolog, mTORC1 binding.	Uncharacterized protein.	0.977
LOC101161855	LOC101162204	ENSORLP00000004585	ENSORLP00000029164	Ras homolog, mTORC1 binding.	TBC1 domain family, member 7.	0.928
LOC101161855	LOC101169126	ENSORLP00000004585	ENSORLP00000035088	Ras homolog, mTORC1 binding.	Zgc:73226.	0.923
LOC101161855	Mtor	ENSORLP00000004585	ENSORLP00000000608	Ras homolog, mTORC1 binding.	Serine/threonine-protein kinase TOR.	0.976
LOC101161855	Tsc2	ENSORLP00000004585	ENSORLP00000032706	Ras homolog, mTORC1 binding.	DUF3384 domain-containing protein.	0.982
LOC101161855	akt1s1	ENSORLP00000004585	ENSORLP00000026390	Ras homolog, mTORC1 binding.	Uncharacterized protein.	0.956
LOC101161855	bnip3	ENSORLP00000004585	ENSORLP00000007434	Ras homolog, mTORC1 binding.	BCL2 interacting protein 3.	0.924
LOC101161855	deptor	ENSORLP00000004585	ENSORLP00000041626	Ras homolog, mTORC1 binding.	DEP domain containing MTOR-interacting protein.	0.952
LOC101161855	mlst8	ENSORLP00000004585	ENSORLP00000003877	Ras homolog, mTORC1 binding.	MTOR associated protein, LST8 homolog (S. cerevisiae).	0.970
LOC101161855	rptor	ENSORLP00000004585	ENSORLP00000031829	Ras homolog, mTORC1 binding.	Regulatory associated protein of MTOR, complex 1.	0.976
LOC101162204	ENSORLP00000031311	ENSORLP00000029164	ENSORLP00000031311	TBC1 domain family, member 7.	Uncharacterized protein.	0.992
LOC101162204	LOC101161855	ENSORLP00000029164	ENSORLP00000004585	TBC1 domain family, member 7.	Ras homolog, mTORC1 binding.	0.928
LOC101162204	Tsc2	ENSORLP00000029164	ENSORLP00000032706	TBC1 domain family, member 7.	DUF3384 domain-containing protein.	0.992
LOC101162204	rptor	ENSORLP00000029164	ENSORLP00000031829	TBC1 domain family, member 7.	Regulatory associated protein of MTOR, complex 1.	0.441