Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101174246Tetraspanin. (245 aa)    
Predicted Functional Partners:
LOC101159320
DAN domain family, member 5.
      
 0.725
GOLM1
Golgi membrane protein 1.
   
  
 0.549
pdzd11
PDZ domain containing 11.
    
 0.509
braf
B-Raf proto-oncogene, serine/threonine kinase.
    
 0.471
LOC101174770
Tetraspanin.
      
 0.462
LOC101169288
Tetraspanin 31; Belongs to the tetraspanin (TM4SF) family.
      
 0.431
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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