Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101164045SEFIR domain-containing protein. (443 aa)    
Predicted Functional Partners:
H2ME78_ORYLA
SEFIR domain-containing protein.
     
 
0.900
Traf3ip2
SEFIR domain-containing protein.
     
 
0.900
traf6
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
    
 0.819
LOC101170323
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
    
 0.727
traf3
TNF receptor-associated factor.
    
 0.727
LOC101156432
Zgc:86598; Belongs to the protein kinase superfamily.
    
 0.706
LOC101160371
Serine/threonine-protein kinase; Belongs to the protein kinase superfamily. CAMK Ser/Thr protein kinase family.
    
 
 0.697
LOC101171628
Serine/threonine-protein kinase; Belongs to the protein kinase superfamily. CAMK Ser/Thr protein kinase family.
    
 
 0.697
LOC100301586
CD40 molecule, TNF receptor superfamily member 5.
    
 
 0.682
irak4
Interleukin-1 receptor-associated kinase 4.
    
 0.626
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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