STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101158428Immunoglobulin-like domain containing receptor 1a. (507 aa)    
Predicted Functional Partners:
ENSORLP00000036342
Stereocilin.
    
 0.546
lrit3
Info leucine-rich repeat, immunoglobulin-like and transmembrane domains 3a.
  
 
  0.517
ripor2
RHO family interacting cell polarization regulator 2.
     
 0.504
LOC101155954
Leucine-rich repeat, immunoglobulin-like and transmembrane domains 1a.
  
 
  0.503
prps1
Phosphoribosyl pyrophosphate synthetase 1B.
      
 0.501
tmem132e
Transmembrane protein 132E.
      
 0.501
lrit1
Leucine-rich repeat, immunoglobulin-like and transmembrane domains 1b.
  
 
  0.499
LOC101162866
Grainyhead like transcription factor 2.
   
  
 0.474
trrap
Uncharacterized protein; Belongs to the PI3/PI4-kinase family.
      
 0.457
Msrb3
Peptide-methionine (R)-S-oxide reductase; Methionine-sulfoxide reductase that specifically reduces methionine (R)-sulfoxide back to methionine. While in many cases methionine oxidation is the result of random oxidation following oxidative stress, methionine oxidation is also a post-translational modification that takes place on specific residues.
      
 0.451
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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