STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
smtnl1Smoothelin-like 1. (402 aa)    
Predicted Functional Partners:
rtn4r
Reticulon 4 receptor.
      
 0.813
LOC101159063
Uncharacterized protein.
  
 
 
0.612
smtnl2
Smoothelin, like.
  
  
 
0.592
LOC101165995
Calponin-homology (CH) domain-containing protein.
  
  
 
0.589
ENSORLP00000044829
Calponin-homology (CH) domain-containing protein.
  
  
 
0.584
pdlim3
PDZ and LIM domain 3a.
   
 
 0.579
pdlim1
PDZ and LIM domain 1 (elfin).
   
 
 0.579
LOC101166813
Smoothelin a.
  
  
 
0.571
LOC101174195
PDZ and LIM domain 5a.
   
 
 0.567
pdlim7
PDZ and LIM domain 7.
   
 
 0.567
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.