STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101171110Transmembrane protein 14Cb. (108 aa)    
Predicted Functional Partners:
ppox
Protoporphyrinogen oxidase; Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX.
   
  
 0.631
LOC101167120
Solute carrier family 25 member 39; Belongs to the mitochondrial carrier (TC 2.A.29) family.
   
  
 0.616
isca1
Iron-sulfur cluster assembly 1.
      
 0.608
LOC101162329
Cytochrome c oxidase assembly factor COX16.
   
  
 0.607
abcb6
ATP-binding cassette, sub-family B (MDR/TAP), member 6a.
      
 0.567
iba57
Iron-sulfur cluster assembly factor IBA57.
      
 0.535
ankrd16
Ankyrin repeat domain 16.
      
 0.513
nsmce4a
Non-structural maintenance of chromosomes element 4; Component of the SMC5-SMC6 complex, that promotes sister chromatid alignment after DNA damage and facilitates double-stranded DNA breaks (DSBs) repair via homologous recombination between sister chromatids.
      
 0.512
abcb7
ATP-binding cassette, sub-family B (MDR/TAP), member 7.
      
 0.498
LOC101172340
Solute carrier family 25 member 37; Belongs to the mitochondrial carrier (TC 2.A.29) family.
      
 0.498
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.