Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
pcgf5Polycomb group ring finger 5a. (247 aa)    
Predicted Functional Partners:
auts2
Activator of transcription and developmental regulator AUTS2 a.
    
 0.999
LOC101164758
Fibrosin.
    
 0.996
PCGF3
Polycomb group ring finger 3.
    
0.993
cbx8
Chromobox homolog 8b.
    
 0.990
LOC101160413
Chromobox homolog 8a (Pc class homolog, Drosophila).
    
 0.989
ENSORLP00000026150
Chromobox homolog 6a.
    
 0.989
RING1
Ring finger protein 1.
   
 0.989
cbx2
Chromo domain-containing protein.
    
 0.988
pcgf6
Polycomb group ring finger 6.
  
 
0.984
rnf2
Ring finger protein 2.
   
0.983
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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