STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nub1Negative regulator of ubiquitin-like proteins 1. (591 aa)    
Predicted Functional Partners:
ENSORLP00000027520
Ubiquitin-like domain-containing protein.
    
 0.985
ENSORLP00000045836
Ubiquitin-like domain-containing protein.
    
 0.985
psmd2
26S proteasome non-ATPase regulatory subunit 2; Component of the 26S proteasome, a multiprotein complex involved in the ATP-dependent degradation of ubiquitinated proteins. This complex plays a key role in the maintenance of protein homeostasis by removing misfolded or damaged proteins, which could impair cellular functions, and by removing proteins whose functions are no longer required. Therefore, the proteasome participates in numerous cellular processes, including cell cycle progression, apoptosis, or DNA damage repair; Belongs to the proteasome subunit S2 family.
    
 0.909
psmd7
Proteasome 26S subunit, non-ATPase 7.
    
 0.900
LOC101157953
Proteasome 26S subunit, non-ATPase 4a.
   
 
 0.891
LOC101173089
Proteasome 26S subunit, non-ATPase 4b.
   
 
 0.891
ufd1
Ubiquitin recognition factor in ER associated degradation 1.
    
   0.886
psmc2
Proteasome 26S subunit, ATPase 2; Belongs to the AAA ATPase family.
    
 0.881
psma3
Proteasome subunit alpha type.
    
  0.877
psmc6
Proteasome 26S subunit, ATPase 6; Belongs to the AAA ATPase family.
    
  0.877
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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