STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nub1Negative regulator of ubiquitin-like proteins 1. (591 aa)    
Predicted Functional Partners:
ENSORLP00000027520
Ubiquitin-like domain-containing protein.
    
 0.904
ENSORLP00000045836
Ubiquitin-like domain-containing protein.
    
 0.904
LOC101157953
Proteasome 26S subunit, non-ATPase 4a.
   
 0.862
LOC101173089
Proteasome 26S subunit, non-ATPase 4b.
   
 0.862
psmd5
Proteasome 26S subunit, non-ATPase 5.
     
 0.744
ubl7
Ubiquitin-like 7b (bone marrow stromal cell-derived).
    
 0.720
psmc4
Proteasome 26S subunit, ATPase 4; Belongs to the AAA ATPase family.
     
 0.701
psme2
Proteasome activator subunit 2.
     
 0.686
zfand4
Zinc finger, AN1-type domain 4.
    
 0.672
psmd3
Proteasome 26S subunit, non-ATPase 3.
     
 0.657
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.