Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ttc25Tetratricopeptide repeat domain 25. (486 aa)    
Predicted Functional Partners:
armc4
Armadillo repeat containing 4.
  
 
 0.935
efcab1
EF-hand calcium binding domain 1.
   
 0.913
LOC101173946
Uncharacterized protein.
   
 
 0.888
Dnali1
Dynein, axonemal, light intermediate chain 1.
   
 
 0.887
drc7
Uncharacterized protein.
   
 
 0.874
LOC101163390
Uncharacterized protein.
   
 0.858
nme5
NME/NM23 family member 5; Belongs to the NDK family.
  
 0.856
cfap52
Cilia and flagella associated protein 52.
   
 0.832
ENSORLP00000042788
Dynein, axonemal, intermediate chain 1, paralog 2.
   
 0.810
efhc1
EF-hand domain (C-terminal) containing 1.
   
 
 0.799
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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