Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LOC101161480Potassium voltage-gated channel, shaker-related subfamily, member 1a; Belongs to the potassium channel family. (490 aa)    
Predicted Functional Partners:
fau
40S ribosomal protein S30.
   
  0.817
kcnk9
Potassium channel subfamily K member.
      
 0.698
kcnab2
Potassium voltage-gated channel, shaker-related subfamily, beta member 2 a.
   
 0.685
kcnj1
Potassium inwardly-rectifying channel, subfamily J, member 1b.
      
 0.655
LOC101156677
Potassium channel, subfamily K, member 5b; Belongs to the two pore domain potassium channel (TC 1.A.1.8) family.
      
 0.650
LOC101170669
Ribosomal protein, large P2; Belongs to the eukaryotic ribosomal protein P1/P2 family.
   
 0.601
KCNAB1
Potassium voltage-gated channel subfamily A member regulatory beta subunit 1.
   
 0.597
LOC101168654
Potassium voltage-gated channel, shaker-related subfamily, beta member 1 b.
   
 0.597
rpl30
Ribosomal protein L30.
   
 0.579
rpl21
Ribosomal protein L21.
   
 0.579
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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