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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101161480Potassium voltage-gated channel, shaker-related subfamily, member 1a; Belongs to the potassium channel family. (490 aa)    
Predicted Functional Partners:
fau
40S ribosomal protein S30.
   
 0.914
kcnj1
Potassium inwardly-rectifying channel, subfamily J, member 1b.
      
 0.816
LOC101156677
Potassium channel, subfamily K, member 5b; Belongs to the two pore domain potassium channel (TC 1.A.1.8) family.
      
 0.814
kcnk9
Potassium channel subfamily K member.
      
 0.813
LOC101170669
Ribosomal protein, large P2; Belongs to the eukaryotic ribosomal protein P1/P2 family.
   
 0.737
rpl31
Ribosomal protein L31.
   
 0.727
rpl23a
Ribosomal protein L23a; Belongs to the universal ribosomal protein uL23 family.
   
 0.726
Rpl35
Ribosomal protein L35.
   
 0.723
rpl29
60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family.
   
 0.723
rpl30
Ribosomal protein L30.
   
 0.722
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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