STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
pcnpPEST proteolytic signal containing nuclear protein. (171 aa)    
Predicted Functional Partners:
gripap1
GRIP1 associated protein 1.
    
   0.905
uhrf1
Ubiquitin-like with PHD and ring finger domains 1.
    
 
 0.726
UHRF2
Ubiquitin like with PHD and ring finger domains 2.
    
 
 0.726
ube3c
Ubiquitin protein ligase E3C.
      
 0.691
cct8
Chaperonin containing TCP1, subunit 8 (theta).
   
  
 0.637
ENSORLP00000028870
UmuC domain-containing protein.
      
 0.635
exosc3
Exosome component 3.
   
  
 0.632
cct6a
Chaperonin containing TCP1, subunit 6A (zeta 1).
   
  
 0.626
med30
Mediator complex subunit 30.
      
 0.625
caprin1
Cell cycle associated protein 1b.
      
 0.618
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.