Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101162206Thymopoietin b. (366 aa)    
Predicted Functional Partners:
lemd3
LEM domain containing 3.
    
 0.598
ppp1r12a
Protein phosphatase 1, regulatory subunit 12A.
   
 0.528
znf451
Zinc finger protein 451.
    
 0.519
tm7sf2
Transmembrane 7 superfamily member 2.
   
  
 0.439
lbr
Lamin B receptor.
   
  
 0.439
LOC101163333
Hyaluronan binding protein 4.
    
 0.412
cdca3
Si:ch211-69g19.2.
  
   
 0.407
LOC101171770
Uncharacterized protein.
    
 0.405
banf1
Barrier to autointegration factor 1.
    
 0.405
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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