Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101161658Allograft inflammatory factor 1-like. (148 aa)    
Predicted Functional Partners:
H2MFT6_ORYLA
Uncharacterized protein.
    
 
 0.726
ppp3r1
Uncharacterized protein.
    
 0.692
srsf10
Serine and arginine rich splicing factor 10.
    
 
 0.658
APOH-2
Apolipoprotein H.
    
 
 0.643
LOC101157992
Uncharacterized protein.
   
 0.629
eea1
Early endosome antigen 1.
    
   0.612
csrp3
Cysteine and glycine-rich protein 3 (cardiac LIM protein).
      
 0.598
LOC101170553
NME/NM23 family member 8; Belongs to the NDK family.
   
 
 0.579
naa10
N(alpha)-acetyltransferase 10, NatA catalytic subunit.
   
  
 0.550
LOC101163333
Hyaluronan binding protein 4.
   
 0.540
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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