Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101164545RAR-related orphan receptor C a. (473 aa)    
Predicted Functional Partners:
LOC101159348
Link domain-containing protein.
      
 0.788
sfxn5
Sidoreflexin.
      
 0.649
ncor1
Nuclear receptor corepressor 1.
    
  0.620
ncor2
Nuclear receptor corepressor 2.
    
  0.620
nrip1
Nuclear receptor interacting protein 1b.
    
 0.612
ARNTL2
Aryl hydrocarbon receptor nuclear translocator like 2.
    
 0.600
LOC101174183
Aryl hydrocarbon receptor nuclear translocator-like 2.
    
 0.600
med1
Mediator of RNA polymerase II transcription subunit 1; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.
    
  0.525
csnk1d
Casein kinase 1, delta b; Belongs to the protein kinase superfamily.
    
 
 0.511
LOC101159313
Aryl hydrocarbon receptor nuclear translocator-like 1a.
    
 0.507
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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