STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101159569Motor neuron and pancreas homeobox 2a. (333 aa)    
Predicted Functional Partners:
cfap65
Si:ch1073-349o24.2.
    
 
 0.696
ina
Internexin neuronal intermediate filament protein, alpha b; Belongs to the intermediate filament family.
      
 0.659
LOC101168288
Sodium channel protein; Mediates the voltage-dependent sodium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a sodium-selective channel through which Na(+) ions may pass in accordance with their electrochemical gradient.
      
 0.654
nfasc
Neurofascin homolog (chicken) a.
      
 0.608
cmc1
COX assembly mitochondrial protein.
      
 0.535
slc6a5
Transporter; Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family.
      
 0.532
LOC101156558
Coiled-coil domain containing 85A, like.
      
 0.467
sox5
HMG box domain-containing protein.
      
 0.466
LOC101175375
Delta-like protein; Putative Notch ligand involved in the mediation of Notch signaling.
      
 0.449
nrp1
Neuropilin; Belongs to the neuropilin family.
      
 0.442
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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