Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101175459BHLH domain-containing protein. (457 aa)    
Predicted Functional Partners:
lmo2
LIM domain only 2 (rhombotin-like 1).
   
 0.850
LOC101173202
RUNX family transcription factor 1.
    
 0.694
LOC101162780
LIM domain binding 1a.
    
 0.661
LOC101158085
LIM-domain binding 1b.
    
 0.661
taf12
TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
      
 0.586
spi1
Spi-1 proto-oncogene b.
   
 0.549
LOC101162198
LIM domain only 1.
    
 0.541
lmo3
LIM domain only 3.
    
 0.541
LOC101160197
E1A binding protein p300 a.
    
 0.525
LOC101168870
E1A binding protein p300 b.
    
 0.525
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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